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First author publications

[1] Prigent, S.*, Valades-Cruz, C. A.*, Leconte, L.*, Maury, L., Salamero, J., Kervrann, C. BioImageIT: Open-source framework for integration of image data-management with analysis. Nature Methods (2022).

[2] Vaz Rimoli, C.*, Valades-Cruz, C. A.*, Curcio, V., Mavrakis, M., Brasselet, S. 4polar-STORM polarized super-resolution imaging of actin filament organization in cells. Nature Communications (2022).

[3] Shaban H*, Valades-Cruz CA* , Savatier J, Brasselet S. Polarized super-resolution structural imaging inside amyloid fibrils using Thioflavine T. Scientific Reports (2017).

[4] Valades-Cruz CA*, Shaban H* , Kress A, Bertaux N, Monneret S, Mavrakis M, Savatier J, Brasselet S. Quantitative nanoscale imaging of orientational order in biological filaments by polarized superresolution microscopy. PNAS (2016).

Corresponding author publications

[1] Prigent S, Valades-Cruz CA, Leconte L, Salamero J, Kervrann C. STracking: a free and open-source Python library for particle tracking and analysis. Bioinformatics (2022).

Other publications

[1] Lemaigre, C., Ceuppens, A., Valades-Cruz, C.A., Ledoux, B., Vanbeneden, B., Hassan, M., Zetterberg, F.R., Nilsson, U.J., Johannes, L., Wunder, C., Renard, H.-F. and Morsomme, P. N-BAR and F-BAR proteins – Endophilin-A3 and PSTPIP1 – control clathrin-independent endocytosis of L1CAM. Traffic. (2023)

[2] Prigent, S., Nguyen, H-N., Leconte, L., Valades-Cruz, C. A., Hajj, B., Salamero, J., Kervrann, C. SPITFIR(e): a supermaneuverable algorithm for fast denoising and deconvolution of 3D fluorescence microscopy images and videos. Scientific Reports (2023)

[3] Forrester A, Rathjen S, Garcia-Castillo MD, Bachert C, Couhert A, Tepshi L, Pichard S, Martinez J, Munier M, Sierocki R, Renard HF, Valades-Cruz CA, Dingli F, Loew D, Lamaze C, Cintrat JC, Linstedt A, Gillet D, Barbier J, Johannes L. Functional Dissection of the Retrograde Shiga Toxin Trafficking Inhibitor Retro-2. Nature Chemical Biology (2020).

[4] Renard, H-F, Tyckaert, F., Lo Giudice, C., Hirsch, T., Valades-Cruz, C. A., Lemaigre, C., Shafaq-Zadah, M., Wunder, C., Wattiez, R., Johannes, L., van der Bruggen, P., Alsteens, D., Morsomme, P. Endophilin-A3 and Galectin-8 control the clathrin-independent endocytosis of CD166. Nature Communications (2020).

[5] Briane V, Vimond M, Valades-Cruz CA, Salomon A, Wunder C, Kervrann C. A sequential algorithm to detect diffusion switching along intracellular particle trajectories. Bioinformatics (2020).

[6] Torrino S, Shen W, Blouin C, Kailasam Mani S., Viaris de Lesegno C, Bost P, Grassard A, Köster D, Valades-Cruz CA, Chambon V, Johannes L, Pierobon P, Soumelis V, Coirault C, Vassilopoulos S, Lamaze C. EHD2 is a mechanotransducer connecting caveolae dynamics with gene transcription. J Cell Biol. (2018).

[7] Banerjee A, Grazon C, Pons T, Bhatia D, Valades-Cruz CA, Johannes L, Krishnan Y, Dubertret B. A Novel Type of Quantum Dot–Transferrin Conjugate Using DNA Hybridization Mimics Intracellular Recycling of Endogenous Transferrin. Nanoscale (2018).

Reviews, Perspective & Comments

[1] Valades-Cruz CA*, Leconte L*, Fouche G*, Blanc T*, Van Hille N*, Fournier K, Laurent T, Gallean B, Deslandes F, Hajj B, Faure E, Argelaguet F, Trubuil A, Isenberg T, Masson J-B, Salamero J, Kervrann C Challenges of intracellular visualization using virtual and augmented reality. Frontiers in Bioinformatics (2022).

[2] Johannes L, Valades-Cruz CA The final twist in endocytic membrane scission. Nature Cell Biology (2021).


[1] Salomon A., Valades-Cruz C. A., Leconte L., Kervrann C. Dense Mapping of Intracellular Diffusion and Drift from Single-Particle Tracking Data Analysis, ICASSP 2020 - 2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), Barcelona, Spain, 2020, pp. 966-970.

Preprints and submitted papers

[1] Abdellah, M.*, Valades-Cruz, C. A.*, Barth, R., Shaban, H. A. Genome-wide analysis of the dynamic and biophysical properties of chromatin and nuclear proteins in living cells with Hi-D. bioRxiv (2022)