Cesar Valades-Cruz
Announcements
Publication updates and research news from Cesar Valades-Cruz.
Publication updates and research news, from the latest work back to 2022.
2026
ManuscriptsBioImageIT reloaded - a new architecture in Journal of Microscopy. →Happy to share a new publication led by Arthur Masson, together with Sylvain Prigent, Ludovic Leconte, Léo Maury, Jean Salamero and Charles Kervrann.
This work introduces a new, red
ManuscriptsGloBIAS case study in Journal of Microscopy. →Very excited to share a new collaborative paper from the GloBIAS community, exploring the reproducibility of bioimage analysis workflows through a case study.
Assessing the reproduc
Manuscripts4polar3D in Nature Communications. →Very happy to share my latest co-first author publication in Nature Communications.
2025
Manuscriptsα5β1 integrin endocytosis imaged by LLSM, published in Nature Communications. →Thrilled to share my latest publication in Nature Communications, a collaboration with Ludger Johannes’ team (Institut Curie, France)!
I contributed to Lattice Light Sheet imaging a
Preprints4polar3D in bioRxiv. →Very happy to share our latest work, now available as a preprint on bioRxiv, which I co–first-authored with Charitra S. Senthil Kumar (I. Fresnel, France) and Miguel Sison (I. Fresne
ManuscriptsDeepCristae in Communications Biology. →Happy to share my recent co-first authour publication in collaboration with Salomé Papereux, Ludovic Leconte, Tianyan Liu, Julien Dumont, Zhixing Chen, Jean Salamero, Charles Kervran
ManuscriptsBeta1 integrin endocytosis imaged by LLSM, published in Nature Cell Biology. →Happy to share my latest publication, a collaboration with Ludger Johannes’ team (Institut Curie, France)!
I contributed to Lattice Light Sheet imaging and image analysis together w
2024
ManuscriptsCell poles analysis in Synechococcus elongatus in Microbiological Research. →Very happy to share with you, a recent publication with Shang-Yu Li, Chenliu He, Prof. Cheng-Cai Zhang and Dr. Yiling Yang from my current institute, Institute of Hydrobiology .
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ManuscriptsHi-D in Nature Protocols. →Very happy to share with you, my recent co-first author publication in collaboration with Roman Barth, Marwan Abdellah and Haitham A. Shaban.
Hi-D is a software capable of detecting
2023
PreprintsSpatial glycan rearrangement in BioRxiv. →Excited to share with you the latest preprint in which I have contributed analyzing LLSM data in spatial glycan rearrangement.
Spatial N-glycan rearrangement on α5β1 integrin nuclea
PreprintsBeta1 integrin endocytosis imaged by LLSM in BioRxiv. →Happy to share with you the latest preprint in which I have participated!
Growth factor-induced desialylation for the fast control of endocytosis.
Check out the Preprint
PreprintsDeepCristae in BioRxiv. →Happy to share with you, my recent collaboration together with Salomé Papereux, Ludovic Leconte, Tianyan Liu, Julien Dumont, Zhixing Chen, Jean Salamero, Charles Kervrann and Anaïs B
ManuscriptsL1CAM endocytosis imaged by LLSM in Traffic. →Happy to share with you a recent publication in collaboration with Camille Lemaigre, H.-F. Renard (Namur University) and Christian Wunder (Institut Curie).
N-BAR and F-BAR proteins
ManuscriptsSPITFIR(e) in Scientific Reports. →Read about our latest denoising/deconvolution software SPITFIR(e).
SPITFIR(e): a supermaneuverable algorithm for fast denoising and deconvolution of 3D fluorescence microscopy image
2022
PreprintsHi-D-Py in BioRxiv. →Happy to share with you, my recent collaboration together with Marwan Abdellah, Roman Barth and Haitham A. Shaban.
We developed a new open-source implementation of High-resolution D
ManuscriptsBioImageIT in Nature Methods. →Very happy to share with you, my last co-first author publication together with Sylvain Prigent and Ludovic Leconte.
Amazing multidisciplinary effort to facilitate multi-language im
ManuscriptsVR/AR perspective in Frontiers in Bioinformatics. →Very excited to share a perspective of the consortium Naviscope, regarding Virtual and Augmented reality in intracellular trafficking.
Challenges of intracellular visualization usin
ManuscriptsSTracking in Bioinformatics. →Happy to share with you, my first corresponding author publication.
STracking: a free and open-source Python library for particle tracking and analysis.
Check out the Manuscript
Manuscripts4polar-STORM in Nature Commun. →Very happy to share with you, my last co-first author publication in collaboration with Sophie Brasselet’s Team, Fresnel Institute.
4polar-STORM polarized super-resolution imaging o