Computational tools

Navigation, tracking, restoration, and data workflows for complex microscopy datasets.

3D+time live cell imaging

NAVISCOPE: navigation and visualization of large-scale live cell imaging data

About: INRIA IPL project combining machine learning-driven detection of regions of interest with automatic quantification of molecular interactions and cell processes, enabling efficient navigation of large 3D+time datasets.

3D spots and cell segmentation

Classification of endocytic entry mechanisms

About: Analysis of clathrin-mediated and glyco(sphingo)lipid/lectin (GL-Lect)-mediated endocytosis using Lattice Light-Sheet Microscopy (LLSM) and 3D single particle tracking.

LLSM and 3D single particle tracking

Image preprocessing and data management

BioImageIT: open-source framework for image data management and analysis

About: Project of the Serpico-STED Team within the National Research Infrastructure France BioImaging, providing an integrative platform for image data management and analysis across the 18 imaging facilities of the infrastructure.

BioImageIT